Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNNKVALVTGGAQGIGFKIAERLVEDGFKVAVVDFNEEGAKAAALKLSSDGTKAIAIKADVSNRDDVFNAVRQTAAQFGDFHVMVNNAGLGPTTPIDTITEEQFKTVYGVNVAGVLWGIQAAHEQFKKFNHGGKIINATSQAGVEGNPGLSLYCSTKFAVRGLTQVAAQDLASEGITVNAFAPGIVQTPMMESIAVATAEEAGKPEAWGWEQFTSQIALGRVSQPEDVSNVVSFLAGKDSDYITGQTIIVDGGMRFR
3GED Chain:A ((2-231))
---NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKE----RPNLFYFHGDVADPLTLKKFVEYAMEKLQRIDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKN--KGRIINIASTRAFQSEPDSEAYASAKGGIVALTHALAMSLGP-DVLVNCIAPGWINVT---EFTQE---------------DCAAIPAGKVGTPKDISNMVLFLCQQ--DFITGETIIVDGGMSK-
General information:
TITO was launched using:
RESULT:
Template:
3GED.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105384 for 1921 contacts (-54.9/contact) +
2D Compatibility (PS) -24620 + (NN) -7349 + (LL) 1720
1D Compatibility (HY) -14400 + (ID) 3450
Total energy: -153483.0 ( -79.90 by residue)
QMean score : 0.544
(partial model without unconserved sides chains):
PDB file :
Tito_3GED.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GED-query.scw
PDB file :
Tito_Scwrl_3GED.pdb
: