Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLKSFITVTLALGMIATTGATVTSNEVSAAEKDKLPATQKAKEMQNVPYTIAVDGIMAFNQSYLNLPKDSQLSYLDLGNKVKALLYDERGVTPEKIRNAKSAVYTITWKDGSKKEVDLKKDSYTANLFDSNSIKQIDINVKTK
1YN5 Chain:A ((42-144))
-----------------------------------------AKEMQNVPYTIAVDGIMAFNQSYLNLPKDSQLSYLDLGNKVKALLYDERGVTPEKIRNAKSAVYTITWKDGSKKEVDLKKDSYTANLFDSNSIKQIDINVKTK
General information:
TITO was launched using:
RESULT:
Template:
1YN5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29923 for 675 contacts (-44.3/contact) +
2D Compatibility (PS) -10741 + (NN) 567 + (LL) 3388
1D Compatibility (HY) -13600 + (ID) 5150
Total energy: -55459.0 ( -82.16 by residue)
QMean score : 0.450
(partial model without unconserved sides chains):
PDB file :
Tito_1YN5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YN5-query.scw
PDB file :
Tito_Scwrl_1YN5.pdb
: