Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIQLNNIHKSFNDVEVIKGIDLSVEQGEVVTLIGRSGSGKTTLLRMINALEIPTEGTVYVNGKTYTSKDKKSQIEVRKQSGMVFQSYNLFPHKTALENV--------MEGLITVKKLKKDEARGKSLELLEKVGLTHVKDQRPHALSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVNDVLKVIKDLANEGMTMVIVTHEMRFAKEVSNNIVFIHEGMIGEQGAPEEMFNRPKTEELRRFLNVINEE
2FGJ Chain:C ((24-241))
---------------ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN---WLRRQVGVVLQD-NVLLNRSIIDNISLANPGMSVEKVIYAAKLAG--AHDFISELRE--GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAARLSTVKN-ADRIIVMEKGKIVEQGKHKELLSEP--ESLYSYL------
General information:
TITO was launched using:
RESULT:
Template:
2FGJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79596 for 1627 contacts (-48.9/contact) +
2D Compatibility (PS) -22724 + (NN) -10529 + (LL) 2448
1D Compatibility (HY) -20000 + (ID) 3950
Total energy: -134351.0 ( -82.58 by residue)
QMean score : 0.420
(partial model without unconserved sides chains):
PDB file :
Tito_2FGJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FGJ-query.scw
PDB file :
Tito_Scwrl_2FGJ.pdb
: