Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLLEIKDLVYKASD-RIILDHISLKVDKGESIAIIGPSGSGKSTFQKQICNLISPTSGELYFKGKPYNDYDPEELRQRISYLMQQSDLFGETIEDNMIFPSLARNDKFDRKRAKQL-IKDVGLGHYQ-------LSSEVENMSGGERQRIAIARQLMYTPDILLLDESTSALDVNNKEKIENIIFKLVEQDVAIMWITHSDDQSMRHFQKRITIVDGKISKVEELNQHE
4PL0 Chain:A ((345-519))
--LSIRELSFSYSDDKKILNSVSLDLFTGKMYSLTGPSGSGKSTLVKIISGYYKNYFGDIYLNDISLRNISDEDLNDAIYYLTQDDYIFMDTLRFNL---RLANYDASENEIFKVLKLANLSVVNNEPVSLDTHLINRGNNYSGGQKQRISLARLFLRKPAIIIIDEATSALDYINESEI-------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4PL0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28944 for 1118 contacts (-25.9/contact) +
2D Compatibility (PS) -17990 + (NN) -5730 + (LL) 5080
1D Compatibility (HY) -14800 + (ID) 2900
Total energy: -65284.0 ( -58.39 by residue)
QMean score : 0.399
(partial model without unconserved sides chains):
PDB file :
Tito_4PL0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PL0-query.scw
PDB file :
Tito_Scwrl_4PL0.pdb
: