Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | --MTKIAMANFKSAMPVFKSHAYLKELEKTLKPQHFDRVFVFPDFLGLLPNAFL----HFTLGAQNAYPRDCGAFTGEITSKHLEELKIHTLLIGHSERRVLLKESPSFLKEKFDFFKGKNFKIVYCIGEDLTTREKGFRAVKEFLSEQLENI-----DLNYSNLIVAYEPIWAIGTKKSASLEDIYLTHGFLKQILNQ--------KTPLLYGGSVNAQNAKEILGIDSVDGLLIGSASLELENFKTIISFL- |
1IF2 Chain:A ((3-251)) | AKPQPIAAANWKCNGTTASIEKLVQVFNEHTISHDV-QCVVAPTFVHIPLVQAKLRNPKYVISAQNAIAKS-GAFTGEVSMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQGFMVIACIGETLQQREAN--QTAKVVLSQTSAIAAKLTKDAWNQVVLAYEPVWAIGTGKVATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNAANAATLYAKPDINGFLVGGASLK-PEFRDIIDATR |
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General information:
TITO was launched using:
| RESULT:
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Template: 1IF2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -135578 for 1904 contacts (-71.2/contact) +
2D Compatibility (PS) -24244 + (NN) -7974 + (LL) 388
1D Compatibility (HY) -15600 + (ID) 3600
Total energy: -186608.0 ( -98.01 by residue)
QMean score : 0.483
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