Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKK-------RQESLDHMLFFGPPGLGKTSISHIIAKEMETNIKITAAPMIEKS--GDLAAILTNL--QAKDILFIDEIHRLSPA-----IEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELSLIIKKAAAKLNQDIKEESADEIAKRSRGTPR-IALRLLKRVRDFALVKNSSLMDLSITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPKTHALLKIPTLNPQTLF |
3VFD Chain:A ((102-336)) | -------------MNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASL---GEKLVRALFAVARELQPSIIFIDQVDSLL--DASRRLKTEFLIEFDGVQ-------------------RVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPENMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFG------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VFD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -103713 for 1507 contacts (-68.8/contact) +
2D Compatibility (PS) -20936 + (NN) -4630 + (LL) 6180
1D Compatibility (HY) -7200 + (ID) 1900
Total energy: -132199.0 ( -87.72 by residue)
QMean score : 0.510
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