Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFLDHEKRRQLLNERHSCKMFDSHYEFSSTELEEIAEIARLSPSSYNTQPWHFVMVTNKDLKKQIAAHSYFN-----------------------EEMIKSASALMVVCSLKPSELLPTSHYMQNLYPESYKVRVIPSFAQMLGVRFNHSMQKLESYILEQCYIAVGQICMGVSLMGLDSCIIGGF--DPLKVGEILEERINKPKIVCLIALGKRVAEASKKSRKSKVDAITWL
3GFA Chain:A ((2-197))
-------MISDSISKRRSIRKYKN-QSISHETIEKIIEAGINAPSSKNRQPWRFVVITEKEKESMLKAMSKGIQNEINDNGLLPGSRQHIAGANYTVEIMKQAPVTIFILNILGKSPLE---KL------------------------SPEERFYEMANMQSIGAAIQNMSLTAVELGLGSLWICDVYFAYRELCEWLNTD---SQLVAAISLGYPDEEPSRRPRLQLSDVTEWR
General information:
TITO was launched using:
RESULT:
Template:
3GFA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110374 for 1251 contacts (-88.2/contact) +
2D Compatibility (PS) -18515 + (NN) -7781 + (LL) 2904
1D Compatibility (HY) -6000 + (ID) 2000
Total energy: -141766.0 ( -113.32 by residue)
QMean score : 0.416
(partial model without unconserved sides chains):
PDB file :
Tito_3GFA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GFA-query.scw
PDB file :
Tito_Scwrl_3GFA.pdb
: