Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDWNEFEMGAVLFPFEKNAQSEMEKHNDERHYTEQSYFTTSVAHWRVAKPVHNNNICINCFNCWVYCPDAAILSREGK-------LKGVDYSHCKGCGVCVDVCPTNPKSLWMFEEQIEPATALTQWPQKQEKKKS
1JB0 Chain:C ((3-69))
--------------------------------------------------TVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFLSIRVYLGAETTRSMGLAY---------
General information:
TITO was launched using:
RESULT:
Template:
1JB0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51421 for 403 contacts (-127.6/contact) +
2D Compatibility (PS) -6485 + (NN) -5094 + (LL) 4756
1D Compatibility (HY) -1200 + (ID) 750
Total energy: -60194.0 ( -149.36 by residue)
QMean score : 0.323
(partial model without unconserved sides chains):
PDB file :
Tito_1JB0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JB0-query.scw
PDB file :
Tito_Scwrl_1JB0.pdb
: