Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQMDAHQIISFIQNSKKATPVKVYLKGDLEKIDFPSDVKTFITGNAGTVFGEWAVVEPLLEANKANIEDYVIENDRRNSAIPLLDMKNINARIEPGAVIRDQVTIGDNAVIMMGASINIGSVIGDGTMIDMNVVLGGRATVGKNCHIGAGSVLAGVVEPPSAQPVIVEDNVVVGANVVVLEGVRIGEGAVVAAGA---------------IVTKDVAPGTV-VAGI-PAR----------ELKKLDAKTASKTEIMQELRQL
3TK8 Chain:A ((145-301))
------------------------------------------------------------------------------------------GFRVVPPAIARRGSFIAKNVVLMPSYTN-IGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEENSVISMGVYLGQSTKIYDRETGEVTYGRIPAGSVVVAGNLPAKDGTHSLYCAVIVKKVDA---------------
General information:
TITO was launched using:
RESULT:
Template:
3TK8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128679 for 1006 contacts (-127.9/contact) +
2D Compatibility (PS) -14787 + (NN) -6754 + (LL) 7916
1D Compatibility (HY) -9600 + (ID) 2600
Total energy: -154504.0 ( -153.58 by residue)
QMean score : 0.458
(partial model without unconserved sides chains):
PDB file :
Tito_3TK8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TK8-query.scw
PDB file :
Tito_Scwrl_3TK8.pdb
: