Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGQYDITGKACIMGILNVTPDSFSDGGSYTTIDSALNQVGEMLEQGVAIVDIGGESTRPGAVFVTAEEEIKRVVPMIKAIREVYPDLLLSIDTYKTEVAQAALDAGVHILNDVWSGLYDGKMLSLAAERNVPIILMHNQEEAV--------YQDIKKEVCEFLLERAERALEAGVSKDNIWIDPGFGFAKTEEQNLELLKGLEQVCDLGYPVLFGISRKRTVNYLLGGNR----EVTERDMGTAALSAWAIAKGCQIVRVHNVEVNKDIVTVISQLV
1EYE Chain:A ((5-270))
----------PVQVMGVLNVTDDSFSDGGCYLDLDDAVKHGLAMAAAGAGIVDVGG--------------ETSRVIPVVKELAA-Q-GITVSIDTMRADVARAALQNGAQMVNDVSGGRADPAMGPLLAEADVPWVLMHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVAAGVDPARLVLDPGLGFAKTAQHNWAILHALPELVATGIPVLVGASRKRFLGALLAGPDGVMRPTDGRDTATAVISALAALHGAWGVRVHDVRASVDAIKVVEAWM
General information:
TITO was launched using:
RESULT:
Template:
1EYE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -178736 for 2111 contacts (-84.7/contact) +
2D Compatibility (PS) -26919 + (NN) -14347 + (LL) 1556
1D Compatibility (HY) -17200 + (ID) 4950
Total energy: -240596.0 ( -113.97 by residue)
QMean score : 0.582
(partial model without unconserved sides chains):
PDB file :
Tito_1EYE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1EYE-query.scw
PDB file :
Tito_Scwrl_1EYE.pdb
: