Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKEHHIPKNSIITVAGTVGVGKSTLTKTLAKRLG-FKTSLEEVDH---------NPYLEKFYHDFERWSFHLQIYFLAERFKEQKTIF---------E---AGGGFVQDRSIYEDTGIFAKMHADKGTMSKVDYKTYTSLFEAMVM-TPYFPHPDVLIYLEGDLENILNRIEQRGREMELQTSRSYWEEMHTRYENWISGF---------NACPVLKLRIEDYDLLNDENSIENIVDQIASVIHDNQKK
1P5Z Chain:B ((23-261))
-------RIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFAS------NLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNE-DF---KDKYESLVEKVKEFLS-----
General information:
TITO was launched using:
RESULT:
Template:
1P5Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77419 for 1424 contacts (-54.4/contact) +
2D Compatibility (PS) -21068 + (NN) -6557 + (LL) 1156
1D Compatibility (HY) -12800 + (ID) 2450
Total energy: -119138.0 ( -83.66 by residue)
QMean score : 0.530
(partial model without unconserved sides chains):
PDB file :
Tito_1P5Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1P5Z-query.scw
PDB file :
Tito_Scwrl_1P5Z.pdb
: