Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVGEGPDTKPTARGQPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLH-FSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELA---AQGDFDKVVVNRRLESACAELVSLLVGTAPGSP
1LVG Chain:A ((5-190))
---------------------RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFS-G-NLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGLFDLVIINDDLDKAYATLKQALSEEIK---
General information:
TITO was launched using:
RESULT:
Template:
1LVG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79976 for 1374 contacts (-58.2/contact) +
2D Compatibility (PS) -20394 + (NN) -10450 + (LL) -32
1D Compatibility (HY) -10000 + (ID) 3850
Total energy: -124702.0 ( -90.76 by residue)
QMean score : 0.600
(partial model without unconserved sides chains):
PDB file :
Tito_1LVG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LVG-query.scw
PDB file :
Tito_Scwrl_1LVG.pdb
: