Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MTERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLLEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAAAPGTIRGDFALETQFNLVHGSDSAESAQREIALWFPGA--------------
1NDP Chain:A ((6-155))
VNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASA-PGSIRGDFGVDVGRNIIHGSDSVESANREIALWFKPEELLTEVKPNPNLYE
General information:
TITO was launched using:
RESULT:
Template:
1NDP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82923 for 1060 contacts (-78.2/contact) +
2D Compatibility (PS) -14593 + (NN) -6084 + (LL) 144
1D Compatibility (HY) -12000 + (ID) 3500
Total energy: -118956.0 ( -112.22 by residue)
QMean score : 0.570
(partial model without unconserved sides chains):
PDB file :
Tito_1NDP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NDP-query.scw
PDB file :
Tito_Scwrl_1NDP.pdb
: