Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRAVVELLAGARRLVIFTGAGVSAESGIPTFRDALGGLWARYDPAALATPAAFADDPALVWGWYEWRRLKVLGVQPNPAHRAIAALSGRIANTRLVTQNVDDLHERAGSRDVLHLHGSLHAPRCATCAAAYRDALPDSVEPEEGRRIEPPRCPACGGQVRPGVVWFGEALPEAALREAFAAACECDLLLSVGTSGVVQPAARIPGLALEHGASVVHVNPQPVRTRHPREHCLVGPAGEVLPELLRRAFPG
1M2K Chain:A ((3-242))
-EKLLKTIAESKYLVALTGAGVSAESGIPTFRGK-DGLWNRYRPEELANPQAFAKDPEKVWKWYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLRVVRCTSCNNSFEVESA-------PKIPPLPKCDKCGSLLRPGVVWAGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHVRKA
General information:
TITO was launched using:
RESULT:
Template:
1M2K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -133783 for 2039 contacts (-65.6/contact) +
2D Compatibility (PS) -26225 + (NN) -17594 + (LL) 644
1D Compatibility (HY) -16400 + (ID) 5600
Total energy: -198958.0 ( -97.58 by residue)
QMean score : 0.470
(partial model without unconserved sides chains):
PDB file :
Tito_1M2K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M2K-query.scw
PDB file :
Tito_Scwrl_1M2K.pdb
: