Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKLHTNHGVITLKLDEEKAPETAANFKEYVKSGHYDNTVFHRVINNFMIQGGGFEPGMKQKPT----RAPIKNEANNGLTNK-VGSIAMARTMDPHSASAQFFINVADNDFLNHTAPTTQGWGYAVFGEVVE-GMDVVNKIKGVATTMRSGHQDVPAEDVIIEKAEIVEE
3BKP Chain:A ((23-193))
KVVLHTSLGDLDVELWARECPLACRNFVQLCLEGYYVNTIFHRVVKDFIVQGGDPTGTGRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLG---TNGNQFFITLARADVLNNAY--------TLFGKVTGHTLYNLMKFNDLEVGKE----DRPMTPPFIKSVDVLWN
General information:
TITO was launched using:
RESULT:
Template:
3BKP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57537 for 1165 contacts (-49.4/contact) +
2D Compatibility (PS) -15588 + (NN) -4442 + (LL) -220
1D Compatibility (HY) -10400 + (ID) 2000
Total energy: -90187.0 ( -77.41 by residue)
QMean score : 0.539
(partial model without unconserved sides chains):
PDB file :
Tito_3BKP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BKP-query.scw
PDB file :
Tito_Scwrl_3BKP.pdb
: