Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MRRPLVAGNWKMHGTHSSVAELIKGLRQLALPSGVDVAVMPPCLFISQVIQGLAGKAIDVGAQNSAVEPMQGALTGETAPSQLADVGCSMVLVGHSERRLILGESDEVVSRKFAAAQSCGLVPVLCVGETRAEREAGKTLEVVARQLGSVIDELGVGAFARAVVAYEPVWAIGTGLTASPAQAQEVHAAIRAQLAAE-NAEVAKGVRLLYGGSVKAASAAELFGMPDIDGGLVGGASLNADEFGAICRAAGS
1IF2 Chain:A ((3-251))
AKPQPIAAANWKCNGTTASIEKLVQVFNEHTISHDVQCVVAPTFVHIPLVQAKLRNPKYVISAQN--AIAKSGAFTGEVSMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQGFMVIACIGETLQQREANQTAKVVLSQTSAIAAKLTKDAWNQVVLAYEPVWAIGTGKVATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNAANAATLYAKPDINGFLVGGASLKPE-FRDIIDATR-
General information:
TITO was launched using:
RESULT:
Template:
1IF2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -154825 for 2097 contacts (-73.8/contact) +
2D Compatibility (PS) -26716 + (NN) -9760 + (LL) 192
1D Compatibility (HY) -19200 + (ID) 5150
Total energy: -215459.0 ( -102.75 by residue)
QMean score : 0.543
(partial model without unconserved sides chains):
PDB file :
Tito_1IF2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IF2-query.scw
PDB file :
Tito_Scwrl_1IF2.pdb
: