Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIFFIDNFDSFSYNLVYELECLGYEVAVYQNDIDPSYLMGLMNEEPKTPLLFISPGPGNPNSS-GNLLKIIAM-AKKKFPILGVCLGLQALAQSYGAKIIRSKEIVHGKATTIAL-KKHAVFKGLGESMVVGRYHSLMASGLPKNLEVIAEHD-NIPMAIVNEEDKILAYQFHPESIMTLQGRALLEQSVGFLRELS
2A9V Chain:A ((14-202))
LKIYVVDNGGQWTHREWRVLRELGVDTKIVPNDIDSSELD-------GLDGLVLSGGAPNIDEELDKLGSVGKYIDDHNYPILGICVGAQFIALHFGASVVKAKHPEFGK-TKVSVMHSENIFGGLPSEITVWENHNDEIINLPDDFTLAASSATCQVQGFYHKTRPIYATQFHPEVEHTQYGRDIFRNFIGICASYR
General information:
TITO was launched using:
RESULT:
Template:
2A9V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135324 for 1591 contacts (-85.1/contact) +
2D Compatibility (PS) -20271 + (NN) -12016 + (LL) 344
1D Compatibility (HY) -10400 + (ID) 2550
Total energy: -180217.0 ( -113.27 by residue)
QMean score : 0.520
(partial model without unconserved sides chains):
PDB file :
Tito_2A9V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2A9V-query.scw
PDB file :
Tito_Scwrl_2A9V.pdb
: