Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLVLAVLLTVAAADSGISPRAVWQFRKMIKCVIPGSDPFLEYNNYGCYCGLGGSGTPVDELDKCCQTHDNCYDQAKKLDSCKFLLDNPYTHTYSYSCSGSAITCSSKNKECEAFICNCDRNAAICFSKA--PYNKAHKNLDTKKYCQS
1JLT Chain:B ((1-117))
----------------------NLFQFAKMINGKL-GAFSVWNYISYGCYCGWGGQGTPKDATDRCCFVHDCCYGRV---RGC-----NPKLAIYSYSFKKGNIVCG-KNNGCLRDICECDRVAANCFHQNKNTYNKNYKFLSSS-RCRQ
General information:
TITO was launched using:
RESULT:
Template:
1JLT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70398 for 846 contacts (-83.2/contact) +
2D Compatibility (PS) -12470 + (NN) -11031 + (LL) 2888
1D Compatibility (HY) -10000 + (ID) 2650
Total energy: -103661.0 ( -122.53 by residue)
QMean score : 0.351
(partial model without unconserved sides chains):
PDB file :
Tito_1JLT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JLT-query.scw
PDB file :
Tito_Scwrl_1JLT.pdb
: