Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD----PSTIEKLAKNKQKP
1Z2A Chain:A ((4-137))
-VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAIS-SWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAK-----
General information:
TITO was launched using:
RESULT:
Template:
1Z2A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77725 for 887 contacts (-87.6/contact) +
2D Compatibility (PS) -14117 + (NN) -9101 + (LL) 340
1D Compatibility (HY) -10000 + (ID) 2250
Total energy: -112853.0 ( -127.23 by residue)
QMean score : 0.458
(partial model without unconserved sides chains):
PDB file :
Tito_1Z2A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Z2A-query.scw
PDB file :
Tito_Scwrl_1Z2A.pdb
: