Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
FIFLALLGAAVAFPVDDDDKIVGGYTCGANTVPYQVSLNSGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSY-NSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKLQGIVSWGS-GCAQKNKPGVYTKVCNYVSWIKQTIASN
2AIQ Chain:A ((1-224))
--------------------VIGGDECNINEHRFLALVYANGSLCGGTLINQEWVLTARHCDRGNMRIYLGMHNLKVLNKDALRRFPKEKYFCLNTRNDTIWDKDIMLIRLNRPVRNSAHIAPLSLPSNPPSVGSVCRIMGWGTITSPNATLPDVPHCANINILDYAVCQAAYKG-LAATTLCAGILEGGKDTCKGDSGGPLICNGQFQGILSVGGNPCAQPRKPGIYTKVFDYTDWIQSIISGN
General information:
TITO was launched using:
RESULT:
Template:
2AIQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -144197 for 1984 contacts (-72.7/contact) +
2D Compatibility (PS) -24278 + (NN) -10001 + (LL) 1656
1D Compatibility (HY) -18800 + (ID) 4300
Total energy: -199920.0 ( -100.77 by residue)
QMean score : 0.634
(partial model without unconserved sides chains):
PDB file :
Tito_2AIQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2AIQ-query.scw
PDB file :
Tito_Scwrl_2AIQ.pdb
: