Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
FPTDDDDKIVGGYTCAANSIPYQVSLN--SGSHFCGGSLINSQWVVSAAHCYKSRIQVRLGEHNIDV-LEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSSYPGQITGNMICVGFLEGGKDSCQGDSGGPVVCNGQLQGIVSWG-YGCAQKNKPGVYTKVCNYVNWIQQTIAAN
2PSX Chain:A ((1-226))
--------IINGSDCDMHTQPWQAALLLRPNQLYCGAVLVHPQWLLTAAHCRKKVFRVRLGHYSLSPVYESGQQMFQGVKSIPHPGYSHPGHSNDLMLIKLNRRIRPTKDVRPINVSSHCPSAGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDAYPRQIDDTMFCAGD-KAGRDSCQGDSGGPVVCNGSLQGLVSWGDYPCARPNRPGVYTNLCKFTKWIQETIQAN
General information:
TITO was launched using:
RESULT:
Template:
2PSX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146880 for 1894 contacts (-77.6/contact) +
2D Compatibility (PS) -24385 + (NN) -10441 + (LL) -20
1D Compatibility (HY) -22000 + (ID) 5150
Total energy: -208876.0 ( -110.28 by residue)
QMean score : 0.725
(partial model without unconserved sides chains):
PDB file :
Tito_2PSX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PSX-query.scw
PDB file :
Tito_Scwrl_2PSX.pdb
: