Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEAPGPAQAAAAESNSREVTEDAADWAPALCPSPEARSPEAPAYRLQDCDALVTMGTGTFGRVHLVKEKTAKHFFALKVMSIPDVIRRKQEQHVHNEKSVLKEVSHPFLIRLFWTWHEERFLYMLMEYVPGGELFSYLRNRGHFSSTTGLFYSAEIICAIEYLHSKEIVYRDLKPENILLDRDGHIKLTDFGFAKKLVDRTWTLCGTPEYLAPEVIQSKGHGRAVDWWALGILIFEMLSGFPPFFDD--NPFGIYQKILAGKLYFPRHLDFHVKTGRMM
4RZ7 Chain:A ((541-755))
------------------------------------------------------IGRG--GTVKLVHHKPTQIRYALKCVSKRSII----QNNIKLEREITAENDHPFIIRLVRTFKDSNCFYFLTELVTGGELYDAIRKLGLLSKPQAQFYLGSIILAIEYLHERNIVYRDLKPENILLDKQGYVKLIDFGCAKKIQGRAYTLVGTPHYMAPEVILGKGYGCTVDIWALGVCLYEFICGPLPFGNDQEDQLEIFRDILTGQLTFPDYVSDQDSINLMK
General information:
TITO was launched using:
RESULT:
Template:
4RZ7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -133358 for 1489 contacts (-89.6/contact) +
2D Compatibility (PS) -21419 + (NN) -5628 + (LL) 3684
1D Compatibility (HY) -25200 + (ID) 4900
Total energy: -186821.0 ( -125.47 by residue)
QMean score : 0.347
(partial model without unconserved sides chains):
PDB file :
Tito_4RZ7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RZ7-query.scw
PDB file :
Tito_Scwrl_4RZ7.pdb
: