Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSYDVIISGGGLLGLITAVGLSNN-----SVSVAVIEKNNLPRIIDDNRAFAISQGSRKILEKLGIWQFIESEAEPILDICILD-ENSPITVH---YNHK-MVSEEPMGYVINSTVIWNAINNNFLNKL--NIYSL--HSYRTIT----------------------------------------------CDAGYVEVTLG------NNQKLISSLLICAEGKNSKLPGLFSMSIIKFDYKQSSIVFNVKHE--LHHQNLAVEQFF-PGGPFAILPMKSGYTSSIVWTEKSEISKMLMNLSEEEFIIELKKRFGSYLGEVKLDGERKSYPLSFASAKKLYK-SRVLLIGDAAHSIHPVAGQGLNLGIRDAESVVRQITAAKAFGIDVGSSYLLKKISRDRCLDNFTMALATDGLNRIFSNRIFCAKTLRNFGLMAVENSKFLKKRFIRHAMGFV |
| 1PN0 Chain:A ((7-425)) | SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST--KVYNGQADGLQCRTLESLKNLGLADKILSEANDMSTIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAYPVTMTLRYMSEDESTPLQFGHKTENGLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSWVRRTLGFEMIGEQTDYIWGVLDAVPASNFPDIRSRCAIHSAESGSIMIIPREN-NLVRFYVQLQA------TKFTPEVVIANAKKIFHPYTFDVQQLDWFTAYHIGQRVTEKFSKDERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKLGLVLT-GRAK--RDILKTYEEERQPFAQALIDFDHQFSRLFSGRPAKDVADEMGVSMDVFKEAFVKGNEFASGTAIN |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1PN0.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -174958 for 2894 contacts (-60.5/contact) +
2D Compatibility (PS) -36161 + (NN) -2746 + (LL) 448
1D Compatibility (HY) -6400 + (ID) 3250
Total energy: -223067.0 ( -77.08 by residue)
QMean score : 0.362
|
|
|