Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNAKRKVVIYIKQYCPFCKRAKELLDEKGV---KYEEIDVFKNS---DLFSNIKLKYNVRTVPQIFIADKNGNYVHHIAGCDKLMDLEREGKLDDMLSTNYDKTDVTTYTSNSDEYEEYVASHDDFM
3L4N Chain:A ((12-107))
---DLSPIIIFSKSTCSYSKGMKELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVTGRGTVPNLLVNG---V---SRGGNEEIKKLHTQGKLLESLQVWSDGKFSVEQR-----------------
General information:
TITO was launched using:
RESULT:
Template:
3L4N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50211 for 607 contacts (-82.7/contact) +
2D Compatibility (PS) -9688 + (NN) -4311 + (LL) 1316
1D Compatibility (HY) -3600 + (ID) 1250
Total energy: -67744.0 ( -111.60 by residue)
QMean score : 0.727
(partial model without unconserved sides chains):
PDB file :
Tito_3L4N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3L4N-query.scw
PDB file :
Tito_Scwrl_3L4N.pdb
: