Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKEI-RNLKIASVLRRAISKVL---MEGKVFNKNVVISDVKLSGDLKKADVYIVLSSLSKKKYNINTVVDEINQSAWLIRKSILSYVDLRFIPKLVFKADLAFDNFVNISKILSNYT
1KKG Chain:A ((1-108))
MAKEFGRPQRVAQEMQKEIALILQREIKDPRLGMMTTVSGVEMSRDLAYAKVYVTFL-NDKDEDAVKAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVEGMR---------
General information:
TITO was launched using:
RESULT:
Template:
1KKG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61779 for 716 contacts (-86.3/contact) +
2D Compatibility (PS) -10878 + (NN) 355 + (LL) 628
1D Compatibility (HY) -6400 + (ID) 1200
Total energy: -79274.0 ( -110.72 by residue)
QMean score : 0.502
(partial model without unconserved sides chains):
PDB file :
Tito_1KKG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KKG-query.scw
PDB file :
Tito_Scwrl_1KKG.pdb
: