Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNKTE----DFAKLVDQTTLDLTYKADKGQCVILDNEDVTDFLRNNDVTQHVSYVASKEPVRSFAVKKQKELAAEKGIVMDGRDIGTVVLPDADLKVYMIASVEERAERRYKDNQLRGIESNFEDLKRDIEARDQYDMNREISPLRKADDAVTLDTTGKSIEEVTDEILAMVSQIK
1CKE Chain:A ((3-222))
AIAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNG-NLEVILEGEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGTVVFPDAPVKIFLDASSEERAHRRMLQLQVKGFSVNFERLLAEIK-------------LVPAADALVLDSTTLSIEQVIEKALQYARQ--
General information:
TITO was launched using:
RESULT:
Template:
1CKE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88534 for 1594 contacts (-55.5/contact) +
2D Compatibility (PS) -21715 + (NN) -8650 + (LL) 1004
1D Compatibility (HY) -13200 + (ID) 3750
Total energy: -134845.0 ( -84.60 by residue)
QMean score : 0.598
(partial model without unconserved sides chains):
PDB file :
Tito_1CKE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CKE-query.scw
PDB file :
Tito_Scwrl_1CKE.pdb
: