Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLLEIKDLVYKASDRIILDHISLKVDKGESIAIIGPSGSGKSTFQKQICNLISPTSGELYFKGKPYNDYDPEELRQRISYLMQQSDLFGETIEDNMIFPSLARNDKFDRKRAKQLIKDVGLGHYQLS------SEVE----NMSGGERQRIAIARQLMYTPDILLLDESTSALDVNNKEKIENIIFKLVEQDVAIMWITHSDDQSMRHFQKRITIVDGKISKVEELNQHE
4Q4A Chain:A ((358-518))
----------------VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENL---KWGREDATDDEIVEA-AKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRI-------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4Q4A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21947 for 1017 contacts (-21.6/contact) +
2D Compatibility (PS) -16472 + (NN) -6244 + (LL) 6596
1D Compatibility (HY) -12000 + (ID) 2600
Total energy: -52667.0 ( -51.79 by residue)
QMean score : 0.397
(partial model without unconserved sides chains):
PDB file :
Tito_4Q4A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Q4A-query.scw
PDB file :
Tito_Scwrl_4Q4A.pdb
: