Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----------------------MVKIGVCGPVGSGKTALIEALTRHMSKDYDMAVITNDIYTKEDAEFMCKNSVMPRDRIIGVETGGCPHTAIREDASMNLEAVEEMHGRFPNLELLLIESGGDNLSATFNPELADFTIFVIDVAEGDKIPRKGGPGITRSDLLVINKIDLAPYVGADLKVMERDSKKMRGEKPFIFTNIRAKEGLDDVIAWIKRNALLED
2HF9 Chain:A ((16-226))
KDILKANKRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGA----KVVPLNTGKECHL----DAHLVGHALEDL--NLDEIDLLFIENVGNLICPADFDLGTHKRIVVISTTEGDDTIEKHPGIMKTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKEVK
General information:
TITO was launched using:
RESULT:
Template:
2HF9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82027 for 1627 contacts (-50.4/contact) +
2D Compatibility (PS) -20925 + (NN) -12494 + (LL) 516
1D Compatibility (HY) -16000 + (ID) 3200
Total energy: -134130.0 ( -82.44 by residue)
QMean score : 0.512
(partial model without unconserved sides chains):
PDB file :
Tito_2HF9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HF9-query.scw
PDB file :
Tito_Scwrl_2HF9.pdb
: