Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIKIQKIHPNALIPKYQTEGSSGFDLHAVEEVVIKPHSVGLVRIGICLSLEVGYELQVRTRSGLALNHQVMVLNSPGTVDNDYRGEIKVILANLSDKDFKVQVGDRIAQGVVQKTYKAEFIECEQLDETSRGSGGFGSTGVSKA
2OKD Chain:C ((22-131))
--------------PTRQSPGAAGYDLYSAYDYTIPPGERQLIKTDISMSMPKFCYGRIAPRSGLSLKG---IDIGGGVIDEDYRGNIGVILINNGKCTFNVNTGDRIAQLIYQRIYYPELEEVQSL------------------
General information:
TITO was launched using:
RESULT:
Template:
2OKD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50138 for 698 contacts (-71.8/contact) +
2D Compatibility (PS) -11719 + (NN) -2156 + (LL) 1792
1D Compatibility (HY) -6800 + (ID) 2000
Total energy: -71021.0 ( -101.75 by residue)
QMean score : 0.435
(partial model without unconserved sides chains):
PDB file :
Tito_2OKD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OKD-query.scw
PDB file :
Tito_Scwrl_2OKD.pdb
: