Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFLDHEKRRQLLNERHSCKMFDSHYEFSSTELEEIAEIARLSPSSYNTQPWHFVMVTNKDLKKQIAAHSYFNEEMIKSASALMVVCSLKPSELLPTSHYMQNLYPESYKVRVIPSFAQMLGVRFNHSMQKLESYILEQCYIAVGQICMGVSLMGLDSCIIGGFDPLKVGEILEERINKPKIVCLIALGKRVAEAS-----KKSRKSKVDAITWL
3H4O Chain:A ((20-189))
------MNFVELAKKRYSCRNYQD-RKVEKEKLEKVLDVARIAPTGGNRQPQRLIVIQEKEGINKLSKA-----ANIYDAPLAILVCGDKDKVWT--------------------------------RPFDGKQLTDIDTSIVTDHMMLQATELGLASVWVCYFNPDIIREEFSLPD-NLEPINILLMGYESKIPESPERHEKTRVPLSEIVSYE
General information:
TITO was launched using:
RESULT:
Template:
3H4O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106077 for 1185 contacts (-89.5/contact) +
2D Compatibility (PS) -17572 + (NN) -4544 + (LL) 2876
1D Compatibility (HY) -4400 + (ID) 1400
Total energy: -131117.0 ( -110.65 by residue)
QMean score : 0.494
(partial model without unconserved sides chains):
PDB file :
Tito_3H4O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3H4O-query.scw
PDB file :
Tito_Scwrl_3H4O.pdb
: