Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVTKLAPDFKAPA-VLG--NNEVDEHFELSKNLGKNGVILFFWPK-DFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAI------ALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCPAGWRKGDKGMKATHQGVAEYLKENSIKL
3QPM Chain:A ((48-237))
AKISKPAPQWEGTAVINGEFK-----ELKLSDYRG-KYLVFFFY-PLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQISKDYGV-----YLEDQGHTLRGLFIIDEKGVLRQITMNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSDTIIPDPSGKLKYFD------
General information:
TITO was launched using:
RESULT:
Template:
3QPM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102478 for 1293 contacts (-79.3/contact) +
2D Compatibility (PS) -18901 + (NN) 117 + (LL) 1268
1D Compatibility (HY) -16000 + (ID) 3850
Total energy: -139844.0 ( -108.15 by residue)
QMean score : 0.542
(partial model without unconserved sides chains):
PDB file :
Tito_3QPM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QPM-query.scw
PDB file :
Tito_Scwrl_3QPM.pdb
: