Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LEKERFRTELIGEKIGQLCKTYQFTYGYRKIAALMKQEEQ--VGINKVQRIMQKYQWQCQVKVKKKNRPGSAYYQTENHLNRNFQASQPLEKLTTDITY-LYFGDCRLYLSSIMDLYNGEIVAYSIGEKQTQN
3OYM Chain:A ((67-164))
----------------------LAHTGREATLLKIANLYWWPNMRKDVVKQLGRCQQ-CLITNASNKA--------SGPILRPDRPQKPFDKFFIDYIGPLPPSQGYLYVLVVVDGMTGFTWLYPTKAP----
General information:
TITO was launched using:
RESULT:
Template:
3OYM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18157 for 464 contacts (-39.1/contact) +
2D Compatibility (PS) -10160 + (NN) -2717 + (LL) 2396
1D Compatibility (HY) -400 + (ID) 700
Total energy: -29738.0 ( -64.09 by residue)
QMean score : 0.444
(partial model without unconserved sides chains):
PDB file :
Tito_3OYM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OYM-query.scw
PDB file :
Tito_Scwrl_3OYM.pdb
: