Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQMDAHQIISFIQNSKKATPVKVYLKGDLEKIDFPSDVKTFITGNAGTVFGEWAVVEPLLEANKANIEDYVIENDRRNSAIPLLDMKNINARIEPGAVIRDQVTIGDNAVIMMGASINIGSVIGDGTMIDMNVVLGGRATVGKNCHIGAGSVLAGVVEPPSAQPVIVEDNVVVGANVVVLEGVRIGEGAVVAAGAIVT---------------KDVAPGTVVA-GIP-----------ARELKKLDAKTASKTEIMQELRQL
3GOS Chain:A ((104-275))
------------------------------------------------------------------------------------------GFRVVPPATVRKGAFIARNTVLMPSY-VNIGAFVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFVGARSEVVEGVIVEEGSVISMGVFIGQSTRIYDRETGEVHYGRVPAGSVVVSGNLPSKDGSYSLYCAVIVKKVDA------GINELLRTI
General information:
TITO was launched using:
RESULT:
Template:
3GOS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -162239 for 1134 contacts (-143.1/contact) +
2D Compatibility (PS) -14625 + (NN) -928 + (LL) 6656
1D Compatibility (HY) -11200 + (ID) 2800
Total energy: -185136.0 ( -163.26 by residue)
QMean score : 0.578
(partial model without unconserved sides chains):
PDB file :
Tito_3GOS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GOS-query.scw
PDB file :
Tito_Scwrl_3GOS.pdb
: