Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLTMDDIVREGHPALREVATEVTFPLSDEEKKLGRDMLEFLINSQDEDLAEKYGLRGGVGIAAPQLAVTKRFLAIHVHDEKD------RLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSERVTIDAFDENGTPLKLRFKGYPAIVIQHEIDHLNGIMFYDHINKENPSYLPPDVDVFG
3U04 Chain:A ((3-183))
-MSVLSIVTVPDKRLSLCSEEVE-KVDQSIRKLVDDMFETM--HA----------NQGLGLAAVQVGVHKRILVMNVPEE--IEGYELYGGPYCIINPKIVDISQE--KVKLKEGCLSVPGYFD-YIVRPQRIAVQYLDYNGNECIIKAQGWLARCLQHEIDHLNGTVFLKYLSKFKRDFAIEKVKK--
General information:
TITO was launched using:
RESULT:
Template:
3U04.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73168 for 1292 contacts (-56.6/contact) +
2D Compatibility (PS) -17152 + (NN) -1409 + (LL) 1040
1D Compatibility (HY) -15600 + (ID) 2700
Total energy: -108989.0 ( -84.36 by residue)
QMean score : 0.416
(partial model without unconserved sides chains):
PDB file :
Tito_3U04.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3U04-query.scw
PDB file :
Tito_Scwrl_3U04.pdb
: