Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKENKYDDKHFFEQYSQMPRSKEGLQAAGEWHEFKKLLPDFHQKVVLDLGCGFGWHCIYAAEQGAKKVVGVDLSARMLTEAKHKTTSPIVHYERRAMENIDIEPETYDIVLSSLALHYVASFNDICQKVNTNLITGGSFVFSVEHPIFTADGRQDWFTDEAGNKLHWPVDRYFNESIRTSHFLGEDVQKYHRTLTTYIQTLLKNGFQINSIIEPEPAPELKDLPEMQDEYRRPMMLIISATKN
3L8D Chain:A ((53-204))
-----------------------------------------KEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENS--------------YPRL----------YGKDVVCNTMMPWEFEQLVKEQGFKVVDGIGVYKRG-------------------------
General information:
TITO was launched using:
RESULT:
Template:
3L8D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92232 for 1127 contacts (-81.8/contact) +
2D Compatibility (PS) -16238 + (NN) -6415 + (LL) 5812
1D Compatibility (HY) -6400 + (ID) 1550
Total energy: -117023.0 ( -103.84 by residue)
QMean score : 0.466
(partial model without unconserved sides chains):
PDB file :
Tito_3L8D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3L8D-query.scw
PDB file :
Tito_Scwrl_3L8D.pdb
: