Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKPIIAGNWKMNKTAAKAGQFAEDVKNNVPSSDAVESVVAAPALFLQELVRLTEGTDLRVSAQNCYFEDEGAFTGEISPFALADLGVSYVIIGHSERREYFHETDEDINKKAHAIFKHGMTPIICCGETLDQREAGQTDTWVRGQIRAALAGLTEEQVIKSVIAYEPIWAIGTGKSSTSADANETCAVIRAEVADAVSQKAADAVRIQYGGSVKPENIADYLAESDIDGALVGGASLEPASFLALLEAVK
1B9B Chain:A ((2-250))
TRKLILAGNWKMHKTISEAKKFVSLLVNELHDVKEFEIVVCPPFTALSEVGEILSGRNIKLGAQNVFYEDQGAFTGEISPLMLQEIGVEYVIVGHSERRRIFKEDDEFINRKVKAVLEKGMTPILCVGETLEEREKGLTFCVVEKQVREGFYGLDKEEAKRVVIAYEPVWAIGTGRVATPQQAQEVHAFIRKLLSEMYDEETAGSIRILYGGSIKPDNFLGLIVQKDIDGGLVGGASLKE-SFIELARIM-
General information:
TITO was launched using:
RESULT:
Template:
1B9B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112311 for 2127 contacts (-52.8/contact) +
2D Compatibility (PS) -27253 + (NN) -12879 + (LL) 208
1D Compatibility (HY) -24400 + (ID) 5850
Total energy: -182485.0 ( -85.79 by residue)
QMean score : 0.565
(partial model without unconserved sides chains):
PDB file :
Tito_1B9B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1B9B-query.scw
PDB file :
Tito_Scwrl_1B9B.pdb
: