Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAKEKFDRSKPHVNIGTIGHVDHGKTTLTAAITTVLAKKGYAD-------AQAYDQIDGAPEERERGITISTAHVEYQ-TDSRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG-PMPQTREHILLSRQVGVPYIVVFMNKCDMVDDEELLELVEMEIRDLLTEYEFPGDDIPVIKGSALKALQGEADWEAKIDELMEAVDSYIPTPERDTDKPFMMPVEDVFSITGRGT----VATGRVERGQVKVGDEVEVI---------GIEEESKKVVVTGVEMFRKLLDYAEAGDNIGALL---RGVAREDIQRGQVLAKPGSITP-HTNFKAETYVLTK--EEGGRHTPFFNNYRPQFYFRTTDVTGIVTLPEGTEMVMPGDNIELAVELIAPIAIEDGTKFSIREG----GRTVGAGVVSNISK |
| 1KK1 Chain:A ((6-410)) | -------SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYR-QIKEFIEGT--VAENAPIIPISALH--------GANIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGKLPPVWDSLRLEVHLLERVVEQELKVEPIKRKEVLLLNVGTARTMGLVTGLGKD---------EIEVKLQIPVCAEPGDRVAISRQIGSRWRLIGYGIIKE--- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1KK1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -157919 for 2952 contacts (-53.5/contact) +
2D Compatibility (PS) -39740 + (NN) -13733 + (LL) 2368
1D Compatibility (HY) -18800 + (ID) 5750
Total energy: -233574.0 ( -79.12 by residue)
QMean score : 0.421
|
|
|