Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKPIVR-DTFFLQQKSQMASR--------ADVSLAKDLQDTLHANQNYCVGMAANMIGSLKRVIIINVG-------ITNLVMFNPVLVAKSD------PYETEESCLSLVG-CRSTQRYRHITISYRDINWKEQQIKLTDFPAQICQHELDHLEGILI
3E3U Chain:A ((2-158))
AVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAA--NGVGLAANQIGCSLRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLY
General information:
TITO was launched using:
RESULT:
Template:
3E3U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76582 for 1017 contacts (-75.3/contact) +
2D Compatibility (PS) -14174 + (NN) 1532 + (LL) 40
1D Compatibility (HY) -4000 + (ID) 1950
Total energy: -95134.0 ( -93.54 by residue)
QMean score : 0.438
(partial model without unconserved sides chains):
PDB file :
Tito_3E3U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3E3U-query.scw
PDB file :
Tito_Scwrl_3E3U.pdb
: