Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKHYQTIIIGAGAAGIGFGSAMQRLGLTNFLIIEKGHIGESFLRWPRT---TQFITPSFTT-----NGFGFPDLNAVIPDTSPAFSFEKEHLSGVEYARYLQLVAAHYNLPIQNETSVLSIDKRDSLFVIKTSKGDFSADYLIMATGEFQNPNTIDIKGADLGMHYGQVDNFHIKSDNPFIIIGGNESACDALTHLVYLGNQVELYTDTFGRKESNPDPSISLSPLTKERLKHIQDHKKEYYSISEGKKAIEIKQIGKQYQVTFDDGSTAESFHKPILSTGFLNTCHLIDGIA-LFEYDKNQLPIVTEDDESTIVNNCFLIGPSLRQRDTIFCYIYKFRQRFVPVINHIAQREGIILDEDTLEFFKENQMYLDNLACCDVNCDC |
2R9Z Chain:A ((2-327)) | TQHFDLIAIGGGSGGLAVAEKAAAFGK-RVALIESKALGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQAS-----LDWPRLVAGR-DRYIGAINSFWDGYVERLGITRVDG-HARFVD----AHTIEVEGQRLSADHIVIATGG--RPIVPRLPGAELGITSDGFFALQ-QQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQ-------FDPLLSATLAENMHA--QGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQN-TNVPGVYALGDITGRDQLTP----VAIAAGRRLAERLFDGQSERKLDYDNIPTVVFAHPPLSKVGLSEPEAR |
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General information:
TITO was launched using:
| RESULT:
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Template: 2R9Z.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -143033 for 2625 contacts (-54.5/contact) +
2D Compatibility (PS) -33084 + (NN) -2789 + (LL) 1300
1D Compatibility (HY) -6400 + (ID) 2400
Total energy: -186406.0 ( -71.01 by residue)
QMean score : 0.442
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