Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMVVKVGINGFGRIGRLAFRRIQNVE--GVEVTRINDLTDPNMLAHLLKYDTTQGRFDGTVEVKE-GGFEVNGQFVKVSAEREPANIDWATDGVEIVLEATGFFASKEKAEQHIHENGAKKVVITAPGGNDVKTVVFNTNH-DILDGTETVISGASCTTNCLAPMAKALQDNFGVKQGLMTTIHAYTGDQMILDGPHRGGDLRRARAGAANIVPNSTGAAKAIGLVIPELNGKLDGAAQRVPVPTGSVTELVATLEKDVTVEEVNAAMKAAA----NDSYGYTEDPIVSSDIVGISYGSLFDATQTKVQTVDGNQLVKVVSWYDNEMSYTSQLVRTLEYFAKIAK
1RM4 Chain:O ((1-336))-KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQA-GAKKVLITAPGKGDIPTYVVGVNEEGYTH-ADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHR--DLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTM---VMGDDMVKVIAWYDNEWGYSQRVVDLADIVANKWQ


General information:
TITO was launched using:
RESULT:

Template: 1RM4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -136548 for 2890 contacts (-47.2/contact) +
2D Compatibility (PS) -35590 + (NN) -12117 + (LL) -24
1D Compatibility (HY) -26800 + (ID) 7500
Total energy: -218579.0 ( -75.63 by residue)
QMean score : 0.529

(partial model without unconserved sides chains):
PDB file : Tito_1RM4.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1RM4-query.scw
PDB file : Tito_Scwrl_1RM4.pdb: