Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIKRRTQEERSAATREALITGARKLWGLRGYAEVGTPEIATEAGVTRGAMYHQFADKAALFRDVVEVVEQDVMARMATLVAASGAATPADAIRAAVDAWLEVS-GDPEVRQLILLDAPVVLGWAGFRDVAQRYSLGMTEQLITEAIRAGQLARQPVRPLAQVLIGALDEAAMFIATADDPKRARRETRQVLRRLIDGMLNG
3PPB Chain:A ((8-193))
------------RTKKQAILETALQLFVSQGFHGTSTATIAREAGVATGTLFHHFPSKEQLLEQLFLGVKQEFADAIQASVSS--RGDLKQDAEQLWFAALTWAMANPLKQAFFQLYSMSPTVEQSVRDQAMHGILGFIAELIRQGQASGELAEYPIELMQDNCHGQYLAATRYFVDHPERWQQAHERSASFALFWNAMA--
General information:
TITO was launched using:
RESULT:
Template:
3PPB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101613 for 1329 contacts (-76.5/contact) +
2D Compatibility (PS) -20135 + (NN) -9064 + (LL) 780
1D Compatibility (HY) -7600 + (ID) 1900
Total energy: -139532.0 ( -104.99 by residue)
QMean score : 0.524
(partial model without unconserved sides chains):
PDB file :
Tito_3PPB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PPB-query.scw
PDB file :
Tito_Scwrl_3PPB.pdb
: