Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLRLVSPIKAFADGIVAVAIAVVLMFGLANTPRAVAADERLQF-TATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP--AVTFVGIATRAD-VGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPAFVFYRADGTSTFVNNPTAAMS--QDELSGRVAALTS
3KCM Chain:A ((4-141))
-------------------------------------EENPAPDFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTGVPETFVIDRHGVILKKV--VGAMEWDHPEVIAFLNNE--
General information:
TITO was launched using:
RESULT:
Template:
3KCM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81383 for 938 contacts (-86.8/contact) +
2D Compatibility (PS) -14462 + (NN) -7894 + (LL) 3584
1D Compatibility (HY) -6400 + (ID) 1500
Total energy: -108055.0 ( -115.20 by residue)
QMean score : 0.488
(partial model without unconserved sides chains):
PDB file :
Tito_3KCM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KCM-query.scw
PDB file :
Tito_Scwrl_3KCM.pdb
: