Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHALIVVAHHHPRSLTHALAARIAEGVVRAGHSAETADLAAEGFEPRFGLADHAVHRGQASP-PADVLAEQARIDRADTLVLVYPIYWWSMPALLKGWIDRVFSNGWAFDYSIGGDLRKKLQRLRVVLVGVGGADAGTFERHGYAGAMRTQIDHGIFDYCGARVVRSELLLESESAD---PIRHLDQALHIGSQLFAARGAQGAAQAQPLEA
3LCM Chain:A ((1-191))
MKILIVYTHPNPTSFNAEILKQVQTNLSK-EHTVSTLDLYAEHFDPVLQFNETHK--RRDLAKVAEMEKYRDLVTWADHLIFIFPIWWSGMPAILKGFIDRVFVADFAYSYKKV-GLEGHLQGKSAWIITTHNTPSFAMPF--VQDYGKVLKKQ-ILKPCAISPVKLTELTSIEKISDDERQKLLHKVAQITRNILEHHHHHH---------
General information:
TITO was launched using:
RESULT:
Template:
3LCM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -144886 for 1401 contacts (-103.4/contact) +
2D Compatibility (PS) -19712 + (NN) -5118 + (LL) 388
1D Compatibility (HY) -13200 + (ID) 2250
Total energy: -184778.0 ( -131.89 by residue)
QMean score : 0.445
(partial model without unconserved sides chains):
PDB file :
Tito_3LCM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LCM-query.scw
PDB file :
Tito_Scwrl_3LCM.pdb
: