Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNTVKTVRELRAAVARARSEGKRIGFVPTMGNLHAGHAALVKKAGER-ADFVVVSIFVNPLQFGPSEDLDTYPRTLAADQERLLEAGCHLLFTPTVEEMYPDGMDGQTRIHVPGVSEGLCGASRPGHFEGVATVVSKLLNMVQPDLALFGEKDFQQLAVIRKLVRDLNLPVQIFGEPTVRAADGLALSSRNGYLDEQQRAAAPAIYRTLRQLGERIRAGAEDFPALLADARQAL-EQAGLRPDYLEIREPISLRPGVPGDRQLVILAAAYLGSTRLIDNLSVHLD
3COV Chain:A ((12-288))
LNVYSAPGDVADVSRALRLTGRRVMLVPTMGALHEGHLALVRAAKRVPGSVVVVSIFVNPMQFGAGGDLDAYPRTPDDDLAQLRAEGVEIAFTPTTAAMYPDGLR--TTVQPGPLAAELEGGPRPTHFAGVLTVVLKLLQIVRPDRVFFGEKDYQQLVLIRQLVADFNLDVAVVGVPTVREADGLAMSSRNRYLDPAQRAAAVALSAALTAAAHAATAGAQAA---LDAARAVLDAAPGVAVDYLELRDIG-LGPMP-LNGSGRLLVAARLGTTRLLDNIAIEI-
General information:
TITO was launched using:
RESULT:
Template:
3COV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -169744 for 2280 contacts (-74.4/contact) +
2D Compatibility (PS) -30864 + (NN) -21668 + (LL) -116
1D Compatibility (HY) -22400 + (ID) 6550
Total energy: -251342.0 ( -110.24 by residue)
QMean score : 0.578
(partial model without unconserved sides chains):
PDB file :
Tito_3COV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3COV-query.scw
PDB file :
Tito_Scwrl_3COV.pdb
: