Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHSLQAKILDPRLGSDFPLPQYATPGSAGLDLRAMLKEDSVLGPGQTLLIPTGLSIYIADPGLAALVLPRSGLGHKHGIVLGNLVGLIDSDYQGELMVSCWNRG-ESPFTIAVGERIAQLVLVPVVQAHFELVEAFDESQRGAGGFGHSGSH
1SM8 Chain:C ((29-150))
-----------RLDPGLPLPSRAHDGDAGVDLYS--AEDVELAPGRRALVRTGVAVAVPF-GMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSF----------------
General information:
TITO was launched using:
RESULT:
Template:
1SM8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81515 for 801 contacts (-101.8/contact) +
2D Compatibility (PS) -12839 + (NN) -3449 + (LL) 804
1D Compatibility (HY) -7600 + (ID) 2350
Total energy: -106949.0 ( -133.52 by residue)
QMean score : 0.384
(partial model without unconserved sides chains):
PDB file :
Tito_1SM8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM8-query.scw
PDB file :
Tito_Scwrl_1SM8.pdb
: