Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVEQKDKYRPCVGIMLFNKQG---------HVFIGKRFDSDSYWQMPQGGIDDGEKLEQAALRELLEEVGTDKAKIIAKNKDWIYYNLPEEVIPTCWNGRYSGQKQRWFLMKFYGEGKDININYTDHPEFKEWRWQSVDNLVAGAIPFKKEVYKTVIEEFSSQIKVSIIK--
4IJX Chain:A ((4-150))
---------RACGLIIFRRCLIPKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQ---------LTIIEGFKRELNYVARNKPKTVIYWLAEVKDYDVEIRLS----HEHQAYRWLGLEEACQLA---QFKEMKAALQEGHQFLCSIEALEH
General information:
TITO was launched using:
RESULT:
Template:
4IJX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46054 for 1023 contacts (-45.0/contact) +
2D Compatibility (PS) -14540 + (NN) -5955 + (LL) 2060
1D Compatibility (HY) -1600 + (ID) 1150
Total energy: -67239.0 ( -65.73 by residue)
QMean score : 0.353
(partial model without unconserved sides chains):
PDB file :
Tito_4IJX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IJX-query.scw
PDB file :
Tito_Scwrl_4IJX.pdb
: