Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKLSSEEIIKMLPHRYPFLMVDRVQSY-KKGIIECRKNITINEPYFQGHFPQRPIVPGVLMIEMAAQSAALLYILDALDGSLPSLDELTAEKIAEKVGYLASVKNFKFKKIVTPGDQLNITCKSQSKLG--HLLEIQVVIRDENKKEVAS-GRMLVSENGN
1Z6B Chain:A ((9-153))
-TSIDIEDIKKILPHRYPFLLVDKVIYMQPNKTIIGLKQVSTNEPFFNGHFPQKQIMPGVLQIEALAQLAGILCLKSD-----------------NNLFLFAGVDGVRWKKPVLPGDTLTMQANLISFKSSLGIAKLSGVG-YVNGKVVINISEMTFALS--
General information:
TITO was launched using:
RESULT:
Template:
1Z6B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86676 for 1027 contacts (-84.4/contact) +
2D Compatibility (PS) -14866 + (NN) -6997 + (LL) 1056
1D Compatibility (HY) -10400 + (ID) 2600
Total energy: -120483.0 ( -117.32 by residue)
QMean score : 0.433
(partial model without unconserved sides chains):
PDB file :
Tito_1Z6B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Z6B-query.scw
PDB file :
Tito_Scwrl_1Z6B.pdb
: