Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLISYKNVNKYYGDYHALRQI---NLEIEPGQVVVLLGPSGSGKSTLIRTMNALESIDDGSLVVNG------------HELANSSSKELVNLRKEVGMVFQHFNLYPHKTVLENITLAPIKVLK-QSKKEAMEIAEKYLKFVNMWERKDSY--PSMLSGGQKQRIAIARGLAM-HPKLLLFDEPTSALDPETIGDVLSVMQKLANDGMNMVVVTHEMGFAREVADRIIFM-ADGEILVDTTDVQDFFDNPTEPRAKQFLSNIINHTSTDL
1B0U Chain:A ((5-261))
-NKLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRT-R-LTMVFQHFNLWSHMTVLENVMEAPIQVL-GLSKHDARERALKYLAKVGIDERAQG-KYPVHLSGGQQQRVSIARALAME-PDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLH-QGKIEEEGDPEQVFGNP-QSPRLQQFLKGSLKKLEH--
General information:
TITO was launched using:
RESULT:
Template:
1B0U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126962 for 1890 contacts (-67.2/contact) +
2D Compatibility (PS) -26027 + (NN) -11641 + (LL) 872
1D Compatibility (HY) -20000 + (ID) 5700
Total energy: -189458.0 ( -100.24 by residue)
QMean score : 0.593
(partial model without unconserved sides chains):
PDB file :
Tito_1B0U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1B0U-query.scw
PDB file :
Tito_Scwrl_1B0U.pdb
: