Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEAPGLAQAAAAESDSRKVAEETPDGAPALCPSPEALSPEPPVYSLQDFDTLATVGTGTFGRVHLVKEK-TAKHFFALKVMSIPDVIRL-KQEQHVHNEKSVLKEVS-HPFLIRLFWTWHDER-FLYMLMEYVPGGELFSYLR-NRGRFSSTTGLFYSAEIICAIEYLHSKE--IVYRDLKPENILLD-RDGHIKLTDFGFAKKLVDRT---WTLCGTPEYLAPEVIQSK---GHGRAVDWWALGILIFEMLSGF-PPFFDDNPFGIYQKILAGKIDFPRHLDFH-----VKDLIKKLLVVDRTRRLGNMKNGANDVKHHRWFRSVD---WEAVPQRKLKPPIVPKIAGDGDTSNFETYPENDWDTAAPVPQKDLEIFKNF |
| 1CDK Chain:A ((8-350)) | --KGSEQESVKEFLAKAKEDFLKKWENPAQNTA------H--LDQFERIKTLGT-G--SFGRVMLVKHKETG-NHFAMKILDKQKVVK-LKQIEHTLNEKRILQAV-NFPFLVKLEYSFKDN-SNLYMVMEYVPGGEMFSHLRRI-GRFSEPHARFYAAQIVLTFEYLHS--LDLIYRDLKPENLLIDQ-QGYIQVTDFGFAKRV-K--GRTWTLCGTPEYLAPEIILS-KGY--NKAVDWWALGVLIYEMAAG-YPPFFADQPIQIYEKIVSGKVRFPS-----HFSSDLKDLLRNLLQVDLTKRFGNLKDGVNDIKNHKWFA---TTDWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEEEIRVSI--NEKCGKEFSEF |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1CDK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -182523 for 2530 contacts (-72.1/contact) +
2D Compatibility (PS) -33933 + (NN) -12118 + (LL) 1772
1D Compatibility (HY) -34000 + (ID) 8050
Total energy: -268852.0 ( -106.27 by residue)
QMean score : 0.474
|
|
|