Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNKTE----DFAKLVDQTTLDLTYKADKGQCVILDNEDVTDFLRNNDVTQHVSYVASKEPVRSFAVKKQKELA-AEKGIVMDGRDIGTVVLPDADLKVYMIASVEERAERRYKDNQLRGIESNFEDLKRDIEARDQYDMNREISPLRKADDAVTLDTTGKSIEEVTDEILAMVSQIK
3R20 Chain:A ((9-225))
--SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGS-DPDVDAAFLAGEDVSSEIRGDAVTGAVSAVSAVPAVRTRLVDIQRKLATEGGRVVVEGRDIGTVVLPDADVKIFLTASAEERARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTSDMDQAQVIAHLLDLV----
General information:
TITO was launched using:
RESULT:
Template:
3R20.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79761 for 1718 contacts (-46.4/contact) +
2D Compatibility (PS) -22827 + (NN) -8616 + (LL) 696
1D Compatibility (HY) -13200 + (ID) 4000
Total energy: -127708.0 ( -74.34 by residue)
QMean score : 0.528
(partial model without unconserved sides chains):
PDB file :
Tito_3R20.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R20-query.scw
PDB file :
Tito_Scwrl_3R20.pdb
: